A Clone Wars AU Concept (Prepare for a Long Post):
Star Wars: the Clone Wars where everything is the same until the Conspiracy ArcâŚ
And itâs not Tupâs inhibitor chip that malfunctionsâŚ
But Rexâs.
Forgive me.
Anakin Skywalker would lose his fucking mind.
After having JUST seen his padawan walk away, this twenty-one/two-ish year-old KID watches his second-in-command-
Rex, who has been at his side since the start of the Clone Wars and wouldnât even shoot KRELL for crying out loud-
Walk up to a Jedi general and shoot her point-blank in the middle of a battle.
Then, heâs having seizures and talking about how âgood soldiers follow ordersâ whenever he so much as looks at a Jedi.
There would be no âhe must have had some kind of breakdownâ-
Anakin would take one look at this and decide, âokay, someone has DONE SOMETHING to my boy and there will be HELL TO PAYâ.
And when someone mentions it might be a virus of some sort and that Rexâs condition is deteriorating?
Anakinâs not leaving that shit up to chance!
After the Hardeen Arc and Ahsokaâs departure, Rex isâwith the exception of R2, Padme, and fucking Sheevâthe best friend this boy has.
Anakinâs flying the fucking ship, and heâs giving the Millenium Falconâs Kessel Run a run for its money as he gets his captain to Kamino.
Fives is sitting in shotgun and white-knuckle gripping the dashboard for the entire fucking flight.
Kix, Tup, and Jesse are watching over Rex in the back, and Kix is *this* close to giving Jesse and Tup a sedative.
*cue R2-D2 scream*
âŚ
Because come on.
Tup is one thing.
Anakin cares about all of his troopers, weâve seen thatâbut if someone tells Anakin that a young trooper he doesnât know too well yet has had a breakdown, he might believe that.
Tupâs first appearance was Umbara. That was his first campaign. Anakin might understand that it did some damage, took a toll even with that âdesigned to withstand any stressâ talk.
Or if someone says âvirusâ, Anakin would be like âokay, thatâs beyond my controlâlet a doctor take overâ. He cares about Tup and wants to help, but itâs not an attachment quite yet.
Rex would have been biologically twenty to Anakinâs nineteen at the start of the Clone Wars, and these guys have been through Hell and back together.
We saw in the first movie, at the Battle of Teth, that helping Rex and his soldiers was Anakinâs FIRST concern until Ahsoka convinced him that the mission came first.
And it broke his heart.
Rex is Anakinâs second-in-command, his partner, his brother, his friend. They both fought, struggled, suffered.
They both met and lost Ahsoka.
Anakin wouldnât lose him too without a fight.
We were robbed of Anakinâs reaction at the end of the Umbara Arc, ROBBED.
We were robbed of Anakinâs reaction to seeing Obi-Wan and Rex at the end of the Zygerria Arc, ROBBED!
âŚ
Anyway, they get to Kamino.
Anakin, who is beyond mother henning at this point (and the rest of his soldiers would find it hilarious if they werenât so worried for their captain), sticks around.
He lets any calls from Master Tiplee go straight to voicemail.
The council is losing their shit (except for Plo Koon, who is observing â¨respectfullyâ¨).
Aayla doesnât approve of attachment, but⌠she does wonder what she would do if it was Bly.
Obi-Wan isnât even surprised, and he promises to keep Cody updated with any news regarding his brother.
(Cody has the entire CC Squad group-chat in a panic, because WHAT THE KRIFF IS WRONG WITH REX?!
Wolffe is getting double the updates because heâs texting Plo, who is trying to help calm him down a bit.
Bly and Monnk are also reaching out to Aayla and Kit, half of the Jedi council is texting during the meeting.
Fox, who is so tired from running this fucking planet that there has to be several cosmic events occurring at once for him to be aware enough to form an âemotionâ, is pulling his prematurely gray hair out.
Seriously, this man is biologically twenty-four/five/six-ish at the time of this arcâlet him sleep, let them all sleep-)
Shaak Ti does her best to try and calm Anakin down as the examination begins.
That all goes out the window the second Nala Se suggests killing Rex to perform an autopsy.
We now have a pissed-off Anakin Skywalker-
And a Fives, Jesse, Tup, and Kix who have come too far to do anything but âride or dieâ-
Barricading themselves in an examination room with a feverish captain who wants to kill their general-
And a scared little med-droid-
And probably R2-D2 too, because heâs also the king of âride or dieâ-
Full Les MisĂŠrables style.
There are six of them (and Rex and AZI) in this little room, and they are ready to take on all of Kamino in a blaze of glory.
With their blasters set to stun, full âVictory and Deathâ style, of course.
Honestly, we were ROBBED!
By canon. Damn it.
Anyway, because Anakinâs not fucking around, he has AZI run all of the tests and has him remove what looks like a fucking tumor in his captainâs head IMMEDIATELY.
Thankfully, Rexâs health has not deteriorated enough at this point because of Mother Hen Anakinâs rushing. He survives the procedure.
Now, Anakin wants to know what the fuck this thing is and why it brainwashed his captain.
Because CLEARLY, Rex is âfineâ now.
If we can take shaken, wondering what the Hell just happened, and questioning his autonomy as âfineâ.
Get this man a hug.
Nala Se goes into her whole âinhibitor chipâ explanation.
Anakin learns that every clone is implanted with one of these chips at a young age to make them more âdocileâ and âobedientâ.
And Anakin fucking Skywalker, born on Tatooine and sold into slavery with his mother, is not having any of that.
He wants to know why the malfunction of a chip resulted in Rex being forced to obey an âorderâ to kill Jedi.
And he takes the soldiers , AZI, and R2, andâbeing the technologically-savvy, rule-breaking son of a gun we know he isâlooks into the chips some more-
Probably in Nala Seâs private labsââhi, kid-ââ
And he finds all of the secret orders imbedded into the chips, learns that they can completely override the clonesâ free will at a vocal cue, and-
Surprise, surprise-
He learns that the Sith played a hand in this, because that recorded conversationâs with fucking DOOKU.
So, naturally, Anakin busts out of Kamino with his boys and brings all of this evidence directly to the council because heâs tired of Nala Seâs shit and doesnât wanna waste time in a debate.
Heâs impatient. We know this.
At this point, every member of the council has a migraine⌠but then they see what heâs got and flip the fuck out.
âHey, troopers! Howâs about a free, mandatory brain surgery?!â
(The CC Squad group-chat is on fire.
Fox is having an existential crisis because heâs been having constant headaches, memory lapses, and violent thoughts regarding the chancellor.
Bly gently tries to tell his vod that all of those things are likely because he hates his fucking job and never sleeps.
Heâs only right regarding about half of the headaches and the âviolent thoughts towards the chancellorâ part.
Everyoneâs just glad that Rex is alive, but theyâre wondering what the Hell is going on.)
âŚ
As the clones start getting their chips removed en masse around the galaxy, Anakin goes to Chancellor Palpatine with the Conspiracy Squadâ˘ď¸ to explain everything.
Fox is there because he wanted to check on his brother personally, even though being around the chancellor makes his skin crawl.
As Anakin explains the situation and the actions being taken, the color drains from the chancellorâs face and his expression darkens.
The room gets cold.
And it occurs to Anakin⌠who is, by no means, an idiot⌠an order to declare the Jedi as traitors and wipe out them out?
Yes, a chip was implanted to make sure that the soldiers would follow through once an audial cueâan order, âexecute Order 66ââhad been given-
But who could get away with that?
Or rather⌠who would even have the ability or authority to even do that?
Likely⌠only the highest authority in the Republic, granted emergency powers in a period of wartime.
Anakin takes a long look at the chancellor, a man he had known since he was nineâwho had watched his career with âgreat interestâ andâŚ
Befriended him⌠or groomed him, maybeâŚ
And he thinks about how the Sith ordered the chips-
And he thinks about how Dooku once warned his master that a Sith Lord, Darth Sidious, controlled the Senate-
And he thinks about the war, all of the destruction and death-
And he thinks about Obi-Wan being made to go undercover to protect this man from a Sith assassination plot-
And he thinks about Ahsokaâs trial-
And he thinks, and he thinks, and he thinksâŚ
And he thinks about when Rex woke up in that hospital room above Ringo Vinda, lost and confused, and he panicked when he had been told that he had murdered a Jedi-
And he thinks about how the captain heâs fought alongside for nearly three years⌠nearly died⌠trapped in his own head and being made to go against principles stronger than Anakinâs own have ever managed to be-
And he thinks about how Rex woke up after his surgery, shaken and scared, and how his brothers had rushed to comfort him⌠and how he had remembered, in that moment, that these grown adults were younger than Ahsoka-
And he thinks about how these troopers have never gotten a choice, and how what power they had over their lives was always intended to be stripped away by a chip. A thirteen year-old scar stings.
And igniting his lightsaber is no decision at all.
And Darth Sidious realizes that, after almost thirteen years of trying to create the perfect apprentice, heâs lost his âDarth Vaderâ.
And why?
Because he gave Anakin Skywalker, the boy who was so strong because always made everything personal, an army of enslaved soldiers and expected that to be okay.
The soldiers are wondering at this point why their general looks so livid all the sudden.
Rex is wondering why his general is looking at the chancellor like heâd looked at the Zygerrians all those missions ago.
It hits them when olâ Sheev lights a red saber.
And they realize just how fucked-up everything about this whole situation has truly been.
From the very start, they have all been pawns.
Now, while the 501st boys are taking their moment of astonishment, we have Fox.
As previously stated, Fox requires several cosmic events to occur at once for him to experience an âemotionâ.
The Chosen One defying the destiny placed before him by challenging a hidden Sith Lord for the fate of the galaxy?
You might be able to squeeze two cosmic events out of there, but two is not âseveralâ.
So, when Anakin and Sheev lock sabers, Fox does something heâs wanted to do since his second week as commander of the Coruscant Guard-
Raises his fucking blaster-
And decides that itâs a good time to empty every last ounce of charge into the Sith Lord that nearly killed his vodâika.
âItâs treason, then.â
Sheev pulls away from Anakin to block the blasts, and Anakinâbecause heâs not an idiotâtakes the opportunity to slice the guy in half.
And because Anakin has learned from his masterâs experiences, he slices this Sith from top to bottom instead of from side to side.
On Mandalore, Darth Maul jumps out of his skin on his throne. His followers are concerned.
Fox has maintenance on speed-dial. Theyâll be there in five minutes. Itâs a reflex.
Get this man some caf.
Jesse throws up in a decorative plant with Kix patting his back while Fives tries to comfort Tupâheâs still new, after all.
Dismemberment takes some getting used to.
Rex is just flabbergasted by everything thatâs happened in the last forty-eight hours, and he looks at his general as Anakin makes his report to the Jedi council.
Anakin keeps his posture straight and his expression calm, his fists clenched and his eyes narrowed. On a holo-callâs terrible resolution, heâll look fine.
But in life, Rex can see that his general is shaking and that his eyes are glassy.
Heâs just a kid.
âŚ
The weeks that follow are difficult.
A new chancellor is elected.
Bail would have been flattered and honored to take the role, but he has a wife at home and could not move to Coruscant.
Padme, on the other hand, has many allies and spends most of her time on Coruscantâand she is willing to be the voice and mediator of the Republic. Her enemies are furious.
The obvious corruption doesnât stand a chance against this force of nature with Sheev no longer pulling strings.
The reveal of all his deals and evil doings leaves the people betrayed and outraged, and they begin denouncing traitors left and right.
If Padme and her allies also uses this whole ordeal as an opportunity to bring to light plans regarding after-war programs for the soldiers of the GAR, thatâs just icing on the cake.
The Separatists flounder for a while, with Dooku having been knocked off-balance by the death of his master.
He can no longer play both sides, control both sides of the board.
Within a few months, he stiffly encourages his congress to begin peace talks.
They may never reunite. As long as they agree to a pact of non-aggression, non-exploitation, and non-occupation, that will be fine.
The armies stand down.
The battle-droids deactivate or are reprogrammed to become defenders, patrollers, or public workers on Separatist planets.
They get paint-jobs based upon the culture of the planet they are situated on, and people are known to laugh at their ridiculous chatter.
Some cultures even have battle-droids that are programmed to watch over crops, livestock, or children. On Raxus, they walk toddlers to school and hold their hands as they cross streets.
Battle-droids are banned on Republic and neutral worlds. Some wounds will never heal, some damage is permanent.
The Republic frees the clones and gives them full rights as citizens once the war ends, and Kaminoan scientists are told that their treason will be pardoned in exchange a cure for the accelerated growth.
The scientists work diligently.
Anakin personally sends all of the inquiring messages whenever thereâs a lull towards the beginning. The lulls cease.
Programs are created in order to create jobs and housing for the troopers.
There is much rebuilding to be done across the worlds ravaged by the war and by natural disasters that have gone unchecked in the past three years due to the conflict.
The Jedi Service Corps opens their arms to hire retired soldiers on as aids throughout the galaxy, allowing them to explore and help others outside of combat if that is their wish.
There are benefits being offered to those who adopt young clones into their families, with strict monitoring of course to ensure the children are being treated well.
Not that anyone would dare fuck with these kids. Consider all of the overprotective older siblings, and the fact that they are everywhere.
More often than not though, clones elect to raise their younger siblings on their own.
Boil decides to carry on Waxerâs spirit.
The Dad Batch is born.
The Mandalorian genes are strong.
This is the way.
Schools have opened their doors, scholarships have been offered. Training programs are being created left and right for these individuals.
Coruscant has witnessed the effectiveness of the clones as law enforcement and will pay to maintain the Coruscant Guard.
With benefits.
Fox isnât sure if he wants to laugh or cry when he hears the words âpaycheckâ and âvacation daysâ.
Cham Syndulla is sick of Orn Free Taaâs shit and takes over, and he opens Rylothâs doors to clone troopers seeking a new home.
The governor of Kiros offers the same, as do many of the people of worlds who feel indebted to the clone troopers.
The Wolfpack awkwardly declines a charitable offer made by the Aleena. Plo Koon finds this very amusing.
The Separatist worlds request that no Jedi or clone troopers visit without express permission. Some wounds will never heal, some damage is permanent.
âŚ
In the wake of all this, Ahsoka is reluctant to ask her soldiers to fight one last time to help free Mandalore from Maul.
But after all this?
The soldiers know exactly how dangerous even one Sith can be.
It shakes them to their core, just knowing Dooku is still out there somewhere and that his voice still influences the Separatist worlds.
They realize the lengths these sons of bitches will go to in order to wipe out the Jedi, and they know this guy has it out for their Jedi.
He killed General Kenobiâs teacher, heâs after General Kenobi, and General Kenobi taught General Skywalker who taught Commander Tano. They know the story, they know the risk.
The clones are free, so they choose.
The 501st and the 212th both descend on Mandalore.
Maul doesnât stand a fucking chance.
And when it comes to the Sith, the clones donât take prisoners.
âŚ
With millions of free, highly-trained, biologically-enhanced, and normally-aging men in the galaxy who now hate his guts out in the galaxy, Dooku learns to sit quietly and politely.
If he ever trains another student, Dooku gives them these (general) words of advice: âdonât fuck with the Jedi, because we gave them an army and then we fucked-up BADLYâ.
Echo is sent back to the Republic with the best prosthetics money can by, a mountain of credits for therapy bills, an unsigned apology note, and Wat Tamborâs head on a plate.
The gesture is recognized for what it is. The Techno-Union is aggravated, but war does not reignite. Everyone knows who did it.
âŚ
Anakin quietly leaves the Jedi Order, bowing his head with a smile on his face.
Heâs brought balance to the Force, the war is ended, his soldiers are free, and he has a pregnant wife (who is relieved to have finally given up her emergency powers) at home.
Heâs looking forward to being a stay-at-home dad, for a while. Heâs tired.
Anakin tinkers with all of Padmeâs private ships and droids and weapons, and all of those of her staff. It drives them crazy.
Obi-Wan and Ahsoka visit all the time, as do many of Anakinâs former soldiers. Some of the clones have even joined Padmeâs staff as some of her guards.
Anakin keeps gently reminding them not to call him âgeneralâ or âsirâ anymore. They squirm or laugh through trying to say âAnakinâ and some even try to avoid names.
When Luke and Leia are born, they have SO. MANY. UNCLES.
And many aunts. Senators, representatives, staff members, citizens of Naboo, people across worlds, and -yes- even Jedi are all invested in the children.
Grampa Yoda wonât admit to being Grampa Yoda but also wonât protest to being called Grampa Yoda. Itâs catching on in the crèches.
After Anakin and Padme have each had their turnâŚ
Obi-Wan is the first to hold Luke and Ahsoka is the first to hold Leia, and then they switch.
But Rex is the first non-parent to hold both of the Skywalker twins at once.
He had been hesitating to go near them.
Rex had never quite gotten over Ringo Vinda and the inhibitor chipâs activation, always worried that the programming was still inside him and that he could hurt one of his Jedi.
Padme is having none of that, and neither is Anakinâso, at the exact same time, they both make up their minds to drop a Force-sensitive baby on this poor man.
And thatâs the first picture anyone has of both of the twins together: being held by Uncle Rex.
Obi-Wan takes it, with Cody laughing at the astonished look on his brotherâs face over his former generalâs shoulder.
Everyone laughs more since the end of the war.
Peace suits them.
âŚ
Uncle Fives is the fun one, but to this day he complains that Uncle Rex is the favorite.
Luke at least tries to tell him otherwise, insisting that they donât play favorites and love everyone in their large and wild family equally.
Uncle Obi-Wan (âIâm too young to be a grandfather, Anakin!â) is proud of Lukeâs negotiating skills.
Leia just smirks. She was lost the day Rex took her to the range and taught her how to handle a blaster for the first time.
How was he supposed to know that nat-borns didnât learn when they were four? That was when he learned, after all!
He knew.
The only thing no one ever argues about is Aunt Ahsoka. No one can compete with Aunt Ahsoka, says Aunt Ahsoka.
Uncle Rex does, in fact, compete with Aunt Ahsoka. He tells better stories.
âŚ
And the Skywalker twins grow up.
They learn from the people around them that love is a powerful thing when it is true, that it can move mountains and save galaxies, but one must be cautious.
They can protect the people they love, fight for them⌠but do so selflessly. Do so because it is the right and kind thing to do, not because it is what you want or need.
And sometimes, you have to be able to let go. This is something that their father never learned how to doâand though it worked out once, they had been very lucky.
A Sith Lord had nearly played Anakin Skywalker into his hands, and the galaxy had known none the wiser until the wrong clone captainâs chip had gone bad and Anakin had gone completely rogue to try and save his best friend.
Love had saved them⌠but love also could have very easily destroyed them, as well.
âŚ
The galaxy is not perfect.
Anakin still struggles against the shadow, and he knows that the issue of slavery is one that needs to be dealt with on many worlds.
Padme tries to help, as does Obi-Wan.
Obi-Wan has a room in their apartments, and he tends to stay there most nights.
After the war, the relative quiet of the temple no longer agrees with him. The city sounds help. Being close to his family helps.
As time passes, they heal more. It will never completely go away, but they get better. They live their lives. They smile.
The Galactic Republic and the Confederacy of Independent Systems have a tense relationship in which they try to avoid each other more often than not.
The clones are better off than they were during the war. They have their own lives, many with careers and even familiesâbut unfortunately, some still treat them as lesser.
The clones lost countless siblings in the war. There are some planets where certain former troopers will never go.
The remembrances in Mandalorian tradition are supposed to be nightly. In clone tradition, itâs monthly. They stay up all night, whispering names and sometimes just numbers.
On planets all around the Republic, the clones gather for these monthly meetings. It doesnât matter if they served together. Thereâs always a time and a place everyone knows.
The Jedi and the Republic officers and fighters are welcome.
Except for Tarkin, who likely wouldnât bother to come anyway, but itâs an unspoken agreement.
On Coruscant, the Skywalker family, Ahsoka, and Obi-Wan never miss it.
Anakin moves amongst the troopers, but he usually ends up with the Conspiracy Squadâ˘ď¸.
Kix gets a doctorate and works in a hospital, and Anakin makes sure to bring caf for him every month.
Obi-Wan visits with the 212th, and he settles down beside Cody. After so many years, they remain very close.
Padme smiles warmly.
Anakin, who has always seen his master as the perfect Jedi, remains hilariously confused.
Ahsoka mingles with the 501st, catching up and reminiscing about times gone by before speculating about the future.
Leia is usually with Rex and Fives, nestled between her uncles.
Luke is always with Echo from the start of it to the end of it. Theyâre usually completely silent, and Luke holds his hand.
Every soldier on Coruscant adores those kids, whether they know it or not.
Anything that would ever want to hurt them better be packing a pretty big blaster, because aliit ori'shya tal'din.
A lot of the soldiers, when they became citizens, took last names.
- Some just went with âFettâ.
- Some chose their starshipâs name.
- Some chose the name of their squad.
- Some chose the name of a favorite place.
However, most soldiers had chosen to take the last names of generals or commanders that they had served under to honor them.
Yes, Jedi arenât supposed to do âattachmentsâ⌠but their soldiers donât mind them.
âŚ
The Jedi are completely changed.
The people of the Republic no longer trust them, as the Jedi had completely missed the fact that a Sith Lord had been in power for well over a decade and drove them into war.
Families no longer want their children to be trained as Jedi, fearing that the order will send their babies off to fight in another war and disapproving of the anti-attachment teaching.
The order has much to reflect upon.
They see how the Skywalker family is thriving, and how even Obi-Wan has changed since he started spending more time with them and less time at the Jedi temple.
By all means, Master Obi-Wan Kenobi is still the greatest Jedi most will ever know.
He follows the code dutifully, controls his emotions with meditation and patience, and acts with wisdom and reason.
But the gray hairs that the war had placed at his temples when he was in his thirties have not spread, the heavy weight that held his shoulders in a permanent slump has lifted, and the young Jedi master smiles.
And it occurs to the members of the council just how much of the burden of the war they had placed on one manâa man who lost his free-spirited but oftentimes unyielding master at twenty-five and immediately took on the responsibility of raising a nine year-old âChosen Oneâ for ten years before being cast into war.
Obi-Wan Kenobi never had a moment to breathe in his lifeâalways having to succeed or please someone to survive, always having to keep moving and working. Now that he is no longer so burdened, he is thriving.
And⌠it is the continued friendships with his retired troopers, people in the communities of Coruscant and abroad, and the Skywalker family that seems to fuel this.
The Jedi Order comes first, but Obi-Wan Kenobi has somehow learned through the war not to fear his attachments.
It is Plo Koon the council decides to sacrifice volunteer to question Obi-Wan about this.
The Kel Dor stops the younger master in a hall one day and asks how he manages to balance his attachments with the light.
Obi-Wan merely folds his hands and replies that everyone he loves seems to die. He is well-acquainted with pain⌠so he is going to enjoy happiness while it lasts.
*cue a bear-hug from Clone Dad Plo Koon*
It is then that every other member of the council again realizes that they probably need to do some serious fucking work.
They need to start telling kids FOR SURE that by âno attachmentsâ they mean âHey, itâs okay to care about people and love themâbut you just canât put one person above everyone else in the galaxy and become selfish and possessive. Okay? Okay?!â because the mental health of the Jedi Order is SHOT.
Again, things arenât perfectâŚ
But maybe they start to get better.
âŚ
âŚ
âŚ
Feel free to add on more and put your own spin on this!
This was just an AU idea I had and more ideas started to pop up and get put down from there!
Obviously, I went down the good path of âoh, everything going better than it did in canonâ but⌠it also couldâve gone worse.
Rex not being there from the Conspiracy Arc onwards? That⌠wouldâve been pretty bad.
âŚ
I would also just like to note that, in the whole timeline I had goingâŚ
It would really, really suck to be Han Solo, however he shows up in this. đ
Leiaâs got Luke, Padme, Anakin, Obi-Wan, Ahsoka, the entire Jedi Order, the entire Grand Army of the Republic and all of its allies, and all of her motherâs allies in the Senate at her back.
And Han has a modified van with rockets and missile-launchers strapped all over it that he uses to smuggle illegal goods.
This guyâs saving grace is that:
1. Intentionally or unintentionally, he keeps screwing over Jabba the Hutt. Anakin would find that hilarious.
2. Heâs a good pilot. Anakin and Luke would respect that a little bit.
3. Ahsoka knows Chewbacca. The exasperated Wookie speaks for this feral human heâs carting around in the drug van.
4. Heâs not a bad guy, genuinely. Heâs loyal to a fault even if he can be a pain in the ass about it because he hates that heâs a sucker.
But while that might be good enough for the Skywalker boys and Ahsoka, theyâve still got Padme and three million uncles to go through.
⌠And Han wouldnât make it past Padme.
âŚ
âŚ
âŚ
Damn it, I love fix-it AUs-





















