WikiPathways Publications

Precision gynecologic oncology: circulating cell free DNA epigenomic analysis, artificial intelligence and the accurate detection of ovarian cancer. Bahado-Singh et al., Sci Rep. 2022; 12: 18625.

Comparative Analysis of Proteomes and Phosphoproteomes in Patients with Prostate Cancer Using Different Surgical Conditions. Ahn et al., World J Mens Health. 2022 Oct; 40(4): 608–617.

Altered acetyl-CoA metabolism presents a new potential immunotherapy target in the obese lung microenvironment. Rosario et al., Cancer Metab. 2022; 10: 17.

Discovering Common Pathogenic Mechanisms of COVID-19 and Parkinson Disease: An Integrated Bioinformatics Analysis. Jahanimoghadam et al., J Mol Neurosci. 2022 Oct 27 : 1–12.

Shared mechanisms and crosstalk of COVID-19 and osteoporosis via vitamin D Liu et al., Sci Rep. 2022; 12: 18147.

Neuronal differentiation pathways and compound-induced developmental neurotoxicity in the human neural progenitor cell test (hNPT) revealed by RNA-seq. de Leeuw et al., Chemosphere. 2022 Oct; 304: 135298.

Inhibition of mTOR signaling protects human glioma cells from hypoxia-induced cell death in an autophagy-independent manner. Divé, et al., Cell death discovery doi: 10.1038/s41420-022-01195-y.

CTpathway: a CrossTalk-based pathway enrichment analysis method for cancer research. Liu et al., Genome Med. 2022; 14: 118.

A Bioinformatic Approach Based on Systems Biology to Determine the Effects of SARS-CoV-2 Infection in Patients with Hypertrophic Cardiomyopathy. Han et al., Comput Math Methods Med. 2022; 2022: 5337380.

Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients. Pham et al., Front Immunol. 2022 Sep 15;13:963357. doi: 10.3389/fimmu.2022.963357.

Spatially resolved characterization of tissue metabolic compartments in fasted and high-fat diet livers. Stopka et al., PLoS One. 2022; 17(9): e0261803.

Machine learning and bioinformatics to identify 8 autophagy-related biomarkers and construct gene regulatory networks in dilated cardiomyopathy. Zhang et al., Sci Rep. 2022; 12: 15030.

Time-course transcriptome analyses of spleen in rainbow trout (Oncorhynchus mykiss) post-Flavobacterium psychrophilum infection. Deng et al., Front Immunol. 2022; 13: 965099.

Developmental RNA-Seq transcriptomics of haploid germ cells and spermatozoa uncovers novel pathways associated with teleost spermiogenesis Castro-Arnau et al., Sci Rep. 2022; 12: 14162.

Identifying Drug-Induced Liver Injury Associated With Inflammation-Drug and Drug-Drug Interactions in Pharmacologic Treatments for COVID-19 by Bioinformatics and System Biology Analyses: The Role of Pregnane X Receptor Huang et al., Front Pharmacol. 2022; 13: 804189.

Identification of differentially expressed genes and their major pathways among the patient with COVID-19, cystic fibrosis, and chronic kidney disease Babua and  Nobel, Inform Med Unlocked. 2022; 32: 101038.

Identification of activity-induced Egr3-dependent genes reveals genes associated with DNA damage response and schizophrenia Marballi et al., Transl Psychiatry. 2022; 12: 320.