Things to Consider While Developing Assays
The development of a biological assay must take a number of fundamental elements into account, regardless of the application or the individual molecule to be analysed. It is crucial to give the assay significant consideration, as well as the entire process that needs to be designed from sample preparation through analysis of the assay's data quality output. The main assay development considerations covered in this article are generally applicable.
No matter the test being created (e.g., antibody-based assays like ELISA and quantitative PCR, electrochemiluminescence, measurement of enzyme activity assays, cell-based assays or total protein/protein concentration, or customised assay like single-molecule activation assay), all are legitimate. Assays come in a wide variety. However, there are some crucial components of test construction that apply to all assays. Here is a simple checklist to help you get ready to build a new assay.
What chemical and objective are being assessed?
The first step is to be crystal clear about the molecule to be tested and the exact attribute that should be assessed. Although it may seem obvious, this issue is very important and forms the basis for all subsequent assay development efforts. For instance, the researcher may want to determine whether they want to assess the overall amount of a specific protein in a cell lysate, only the phosphorylated form, or both. Similar to this, the study can mandate that measurements be made of particular isoforms or splice variants of the relevant protein. The assay needs to be created to yield precise data on the molecule being studied.
What’s the source of the molecule?
It is crucial to take into account the molecule's source before doing the analysis. Do you want to measure the molecule in a body fluid like serum or urine? Â Is the molecule to be evaluated in a biopsy sample from a human or an organ taken from an experimental animal? It's possible that the source will be in vitro-cultured cells, in which case it's crucial to assess whether the cells are limited primary cells or an easily scaled-up immortalised cell line.
The availability and number of samples will depend on the molecule's source. As mentioned in the sections that follow, it will also establish the molecule's concentration and could significantly affect its stability. Therefore, it is likely that the origin of the target molecule will have a substantial impact on the final test workflow while doing tests like silver assay, gold assay etc.
Molecular stability
Understanding the stability of the chemical for which the assay is to be built is also crucial. Does it require additional care to be taken during sample collection and preparation for the test in order to produce valid assay results, or is it moderately or severely unstable? Even molecules that are stable when they are isolated may become unstable when they are exposed to the complex biological environment of the samples that will be tested, where they may be vulnerable to oxidation, proteolysis, or the loss of post-translational modifications.
Semi-quantitative v/s quantitative
It's critical to decide up front whether a semi-quantitative measurement of the molecule, such as a Western blot, would suffice for the project's needs or whether a rigorously quantitative assay is necessary in order to create an assay that is appropriate for the task at hand.
The quantity of samples to be analysed
How many samples will need to be analysed is another crucial factor to take into account. A labour-intensive, multi-step manual assay approach may be appropriate if just a small number of samples will be analysed. Conversely, it will be crucial to simplify, streamline, and automate the assay procedure as much as lab resources permit, for example, with a format like microarray, if hundreds or tens of thousands of tests are to be conducted, maybe as part of a chemical profiling exercise. But arrays have their own unique set of issues, namely intra-assay spatial fluctuation.
Our approach to effective assay development could benefit your company whether you're wanting to increase your competitive edge or release a new diagnostic product. AgPlus Diagnostics tried-and-true method for assay development could improve your offering and your company if you're seeking a competitive advantage or want to introduce a new diagnostic product to the market.














