#goddess!sky

So they go through the storyline, Zelda and Link 'impersonating' each other, except that its not working. Zelda isn't gaining the memories of the Goddess, no matter how much she purifies herself in the springs. Impa is getting frustrated, and so is Zelda, but still nothing happens. Link, on the other hand, is drawn to the water, so much that he can't leave the springs without interacting with it in some way. He starts having weird dreams again, like the one he had before their adventure started. He gains whatever memories that Hylia intended to give to Zelda, but thinks that they are only dreams. Spoiler: they're not.

Link and Zelda meet up again at the Sealed Grounds, and Zelda gives her speech, and attempts to form the crystal that will hold her in the past. As Link runs to her, the crystal doesn't form as expected, so he manages to push her out of the way, and the crystal forms around him instead.

So, everyone is in shock, not understanding what just happened. The Goddess Sword is somehow not in the crystal, and Fi emerges to talk to Zelda and Impa, explaining the dreams Link had been having. Everything clicks into place, and Impa realizes that she's been protecting the wrong person. By this point, Fi is already 'attached' to Link, but is willing to work with Zelda to get him back.

As they adventure together, Fi tells Zelda who tells Impa (who is there on occasion, as she mostly stays in the temple to watch over Link) how obsessive and awful Ghirahim has been, and Zelda realizes how much harder she and Impa had made it on Link to be able to catch up with them, and how much danger he had been in. If Ghirahim had realized that Link was the Goddess reborn, they would have been doomed.

So the end of the game comes around, and everything is the same except, ya know, the roles are reversed, so when Ghirahim takes Zelda to try and start the ritual to resurrect Demise, nothing happens. Only, we all saw Zelda after the crystal let her go, and she was not really in any soft of shape to go fight a literal demon lord or the God of Hatred, so when Ghirahim realized he has the wrong person, it's all too easy to grab Link instead.

Fi and Zelda step up to fight Ghirahim, and then Demise and Link is sacrificed-for lack of a better word- to resurrect Demise. Zelda and Fi eventually defeat them both, but it takes far longer than it did in game, because she has much less experience than Link does. The curse is still in play, nothing fundamental has changed in terms of the plot other than the fact that Link is the Goddess reborn and Zelda holds half of the Hero's Spirit, and Link holds the other.

(That's another thing, I feel like both Link and Zelda would hold part of the hero's Spirit for this, for it to have gone on for so long, which is why Fi didn't realize that anything was wrong. She was still technically, with the Goddesses Chosen Hero, after all.)

That leads me to the Linked Universe part of the idea. Obviously, Link is still, in part, the Goddesses Chosen Hero, and ends up with the chain, still taking the name Sky. He doesn't realize that the others don't share the Spirit of the Hero with their Zelda, (or that none of them are the Goddess reborn or Goddess descendant, like their Zeldas) and therefore doesn't say anything about it. He has some suspicions when a few of the boys get very vocal about their dislike for the Goddess, (time and legend), but by the time he realizes. he's too scared about how they'll react to him telling the truth. Their dislike is intense, and honestly scares him. Wild has his suspicions, because of how he can talk to and interact with the Goddess statues, the power they give off, but isn't sure. he doesn't say anything.

They end up in Wild's era, and meet up with Flora, who completely freaks out because she can feel the Goddesses power in Sky. Cue the major freakout from all ends. Wild freaks out because his suspicions were correct. The rest of the chain freaking out because they have been traveling with the Goddess Reborn and some of them think that it's so cool! Others don't like it that much. Flora freaks out because she has someone she can talk to, someone who knows the struggles of the power, someone who understands. And Sky does understand! Even though their adventure was over, he still struggles with the power he now holds, and everything that happened.

Cue again the fallout of realizing that they've been traveling with the Goddess Reborn, one of their brothers having to stand there and listen to the hate that had been spewed about him, too scared to speak up and defend himself. It all turns out alright in my head, but not without a good amount of angst, fear, and stress, and maybe a dangerous enemy or two.